Publications

  • Troullinou E, Tsagkatakis G, Palagina G, Papadopouli M, Smirnakis SM, Tsakalides P. Dictionary Learning for Spontaneous Neural Activity Modeling. Signal Processing Conference (EUSIPCO), 2017 25th European, DOI:10.23919/EUSIPCO.2017.8081475 (PDF)
  • Ash RT, Fahey PG, Park J, Zoghbi HY, Smirnakis SM. Increased Axonal Bouton Stability During Learning in the Mouse Model of MECP2 Duplication Syndrome. BioRxiv, September 2017, DOI:doi.org/10.1101/186239 (PDF)
  • Smyrnakis I, Andreadakis V, Selimis V, Kalaitzakis M, Bachourou T, Kaloutsakis G, Smirnakis SM, Aslanides IM RADAR: A Novel Fast-Screening Method for Reading Difficulties with Special Focus
    on Dyslexia.      PloS ONE, August, 2017, DOI:doi.org/10.1371/journal.pone.0182597
  • Lee S, Meyer JF, Park J, Smirnakis SM. Visually Driven Neuropil Activity and Information Encoding in Mouse Primary Visual Cortex. Frontiers in Neural Circuits, July 2017, DOI:doi.org/10.3389/fncir.2017.00050 (PDF)
  • Palagina G, Meyer J, Smirnakis S. Complex Visual Motion Representation in Mouse V1. Journal of Neuroscience 37 (1) 164-183, January 2017,  DOI: doi.org/10.1523/JNEUROSCI.0997-16.2017 (PDF)
  • Smirnakis SM. Probing Human Visual Deficits with Functional Magnetic Resonance Imaging. Annual Reviews of Vision Science, Vol. 2: 171-195, Oct 2016, DOI: doi.org/10.1146/annurev-vision-111815-114535 (PDF)
  • Lu H, Ash RT, He L, Kee SE, Wang W, Yu D, Hao S, Meng X, Ure K, Ito-Ishida A, Tang B, Sun Y, Ji D, Tang J, Arenkiel BR, Smirnakis SM, Zoghbi HY. Loss and gain of MeCP2 cause similar hippocampal circuit dysfunction that is rescued by Deep Brain Stimulation in a rett syndrome mouse model. Neuron 91(4):739-747, Aug 17, 2016. DOI: doi.org/10.1016/j.neuron.2016.07.018 (PDF)
  • Papanikolaou A, Keliris GA, Lee S, Logothetis NK, Smirnakis SM. Nonlinear population receptive field changes in human area V5/MT+ of healthy subjects with simulated visual field scotomas. Neuroimage. Oct 15; 120: 176-90, 2015 (PDF)
  • Lee S, Papanikolaou A, Keliris GA, Smirnakis SM. Topographical estimation of visual population receptive fields by fMRI. J. Vis. Exp. (96), e51811, doi:10.3791/51811, 2015 (PDF)
  • DaiWai M. Olson, W. Andrew Kofke, Kristine O’Phelan, Puneet K. Gupta, Stephen A. Figueroa, Stelios M. Smirnakis, Jose I. Suarez; Second Neurocritical Care Research Conference Investigators. Global monitoring in the neurocritical care unit. Neurocritical Care. Jun; 22(3):337-47, 2015
  • Bershad EM, Rao CP, Vuong KD, Mazabob J, Brown G, Styron SL, Nguyen T, Delledera E, Smirnakis SM, Lazaridis C, Georgiadis AL, Mokracek M, Seipel TJ, Nisbet JJ, Baskaran V, Chang AH, Stewart P, Suarez JI. Multidisciplinary protocol for rapid head computed tomography turnaround time in acute stroke patients. J Stroke Cerebrovasc Dis. Jun; 24(6):1256-61, 2015
  • Um K, Niu S, Schwecter B, Liu F, Hiles L, Narayanan A, Ash RT, Smirnakis SM, Tolias KF. Dynamic control of excitatory synapse development by a novel Rac1 GTPase regulatory complex. Developmental Cell, 29(6):701-15, June 2014
  • Ecker AS, Berens P, Cotton RJ, Subramaniyan M, Denfield GH, Smirnakis SM, Bethge M, Tolias AS. State dependence of noise correlations in macaque primary visual cortex. Neuron 82(1):235-48, April 2, 2014 (PDF)
  • Papanikolaou A, Keliris GA, Papageorgiou D, Shao Y, Krapp E, Papageorgiou E, Stingl K, Bruckmann A, Schiefer U, Logothetis NK, Smirnakis SM. Population receptive field analysis of the primary visual cortex complements perimetry in patients with homonymous visual field defects. Proc Natl Acad Sci U S A, 111(16): E1656-65, April 22, 2014 (PDF)
  • Jiang M, Ash RT, Baker SA, Suter B, Ferguson A, Rudy J, Torsky SP, Chao H, Zoghbi HY, Smirnakis SM. Dendritic Arborization and Spine Dynamics Are Abnormal in the Mouse Model of MECP2 Duplication Syndrome. J Neurosci 33(50): 19518-33, December 2013 (PDF)
  • Shao Y, Keliris GA, Papanikolaou A, Fischer DM, Zobor D, Jägle H, Logothetis NK, Smirnakis SM. Visual Cortex Organization in a Macaque Monkey with Macular Degeneration. Eur J Neuroscience 38(10):3456-64, Nov, 2013
  • Lee S, Papanikolaou A, Logothetis NK, Keliris* GA, Smirnakis* SM. A new method for estimating population receptive field topography in visual cortex. *Equal contribution. Neuroimage 81:144-157, May 16, 2013 (PDF)
  • Smyrnakis IM, Smirnakis SM. Information transfer through stochastic transmission of a linear combination of rates. Neural Computation, 25(9):2265-302, Sept 2013
  • Kim J-Y, Ash RT, Ceballos-Diaz C, Levites Y, Golde TE, Smirnakis SM, Jankowsky JL. Viral transduction of the neonatal brain delivers controllable genetic mosaicism for visualizing and manipulating neuronal circuits in vivo. European Journal of Neuroscience, 37(8):1203-20, April 2013
  • Hannawi Y, Smirnakis SM. Emerging subspecialties: neuroinformatics. Neurology 80(15):e166-8, April 9, 2013
  • Fischer DM, Zobor D, Keliris GA, Shao Y, Seeliger MW, Haverkamp S, Jägle H, Logothetis NK, Smirnakis SM. Detailed functional and structural characterization of a macular lesion in a rhesus macaque. Documenta Ophthalmologica 125:179-194, 2012
  • Suarez JI, Geocadin R, Hall C, Le Roux PD, Smirnakis SM, Wijman CA, Zaidat OO. The Neurocritical Care Research Network: NCRN. Neurocrit Care. Feb; 16(1): 29-34, 2012
  • Wijman CA, Smirnakis SM, Vespa P, Szigeti K, Ziai WC, Ning MM, Rosand J, Hanley DF, Geocadin R, Hall C, Le Roux PD, Suarez JI, Zaidat OO. First Neurocritical Care Research Conference Investigators. Research and technology in neurocritical Care. Neurocrit Care. Feb; 16(1): 42-54, 2012
  • Hall CE, Mirski M, Palesch YY, Diringer MN, Qureshi AI, Robertson CS, Geocadin R, Wijman CA, Le Roux PD, Suarez JI and the First Neurocritical Care Research Conference Investigators. Clinical trial design in the neurocritical care unit. Neurocrit Care 16(1):6-19, Feb 2012
  • Nichols JA, Nichols AR, Smirnakis SM, Engineer ND, Kilgard MP, Atzori M. Vagus nerve stimulation modulates cortical synchrony and excitability through the activation of muscarinic receptors. Neuroscience. 189:207-14. Aug 25, 2011
  • Wandell B and Smirnakis SM. Plasticity and stability of visual field maps in adult primary visual cortex. Nature Reviews Neuroscience, 10(12):873-84, 2009 (PDF)
  • Schmid MC, Panagiotaropoulos T, Augath M, Logothetis NK, Smirnakis SM. Visually driven activation in macaque areas V2 and V3 without input from the primary visual cortex. PLoS ONE, 4(5):e5527, 2009
  • Golshani P, Gonçalves JT, Khoshkhoo S, Mostany R, Smirnakis SM. Internally mediated developmental desynchronization of neocortical network activity. J Neurosci. 29(35):10890-9, 2009 (PDF)
  • Tehovnik EJ, Slocum WM, Smirnakis SM, Tolias AS. Microstimulation of visual cortex to restore vision. Prog Brain Res. 175:347-75, 2009
  • Smirnakis SM. The whole is greater than the sum of its parts: implications of spatio-temporal correlations for neural encoding in the primate retina. CellScience, 5(2):49-54, 2008
  • Smirnakis SM, Schmid MC, Weber B, Tolias AS, Augath M, Logothetis NK. Spatial specificity of BOLD versus cerebral blood volume fMRI for mapping cortical organization. Journal of Cerebral Blood Flow and Metabolism. 2007; 27(6): 1248-61
  • Schmid MC, Oeltermann A, Juchem C, Logothetis NK, Smirnakis SM. Simultaneous EEG and fMRI in the macaque monkey at 4.7T. Magnetic Resonance Imaging, 24(4):335-42, May 2006
  • Smirnakis SM, Schmid MC, Brewer AA, Tolias AS, Schüz A, Augath M, Inhoffen W, Wandell BA, Logothetis NK. Neuroscience: Rewiring the adult brain (Reply). Nature, vol. 438, p.E3-E4, 2005
  • Smirnakis SM, Brewer AA, Schmid MC, Tolias AS, Schüz A, Augath M, Inhoffen W, Wandell BA, Logothetis NK. Lack of long-term cortical reorganization after macaque retinal lesions. Nature, vol. 435, p.300-7, 2005 (PDF)
  • Ning M, Smirnakis S, Furie K, Sheen VL. Adult Acute Disseminated Encephalomyelitis Associated with Poststreptococcal Infection. Journal of Clinical Neuroscience 12(3): p.298-300, 2005
  • Tolias AS, Keliris G, Smirnakis SM, Logothetis NK. Neurons in macaque area V4 acquire directional tuning after adaptation to motion stimuli. Nature Neuroscience 8(5):591-3, 2005 (PDF)
  • Tolias AS, Smirnakis SM, Augath M, Trinath T, Logothetis N. Motion Processing in the Macaque; Revisited with functional Magnetic Resonance Imaging. J. Neurosci., 21: 8594-8601, 2001 (PDF)
  • Tolias A, Moore T, Smirnakis SM, Siapas A, Tehovnik E, Schiller P. Eye Movements Modulate Visual Receptive Fields of V4 Neurons. Neuron 29: 757-767, 2001 (PDF)
  • Smirnakis SM, Berry MJ, Warland DK, Bialek W, Meister M. Adaptation of Retinal Processing to Image Contrast and Spatial Scale. Nature, vol. 386, p. 69-73, 1997 (PDF)
  • Smirnakis SM, Yuille A. Neural Implementation of Bayesian Vision Theories by Unsupervised Learning. The Neurobiology of Computation, eds J. M. Bower, Kluwer Academic Publishers 1995; p: 427-432
  • Yuille A, Smirnakis SM, Xu L. Bayesian Self-Organization Driven by Prior Probability Distributions. Neural Computation. Vol. 7 (3), p: 580-593, May 1995
  • Yuille A, Smirnakis SM, Xu L. Bayesian Self-Organization. Advances in Neural Information Processing. Systems 6, eds Cowan J, Tesauro G, Alspector J, Morgan-Kaufmann 1994; p: 1001-8

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